基于二代测序平台的90个常染色体SNP分型研究

目的基于二代测序平台进行90个常染色体SNP位点分型,调查其在中国广东汉族人群中的多态性,评估其法医学应用价值。方法采集100例中国广东汉族无关个体外周血样,采用Auto Mate Express TM提取样本DNA,使用HID-Ion Ampli Seq?Identity Panel分型体系复合扩增90个SNP位点制备文库,Ion One Touch?2进行乳化PCR,Ion PGM?平台进行测序,Torrent_Suite_v4.4.2软件及HID_SNP_Genotyper_v4.3.1插件进行数据分析,计算常用法医学参数并与该群体Goldeneye TM 20A体系的检测效能进行比较。结果经Bonferroni法校正后,90个常染色体SNP位点分布均符合Hardy-Weinberg平衡,不存在连锁不平衡现象。各位点平均杂合度(Ho)为0.423,平均个体识别力(DP)为0.560,平均多态信息含量(PIC)为0.329。90个SNP体系的累积个体识别率(CDP)为(1-1.20×10~(-33)),大于20A体系;三联体累积非父排除率(CPE_(tri))为0.999 999 911,二联体累积非父排除率(CPE_(duo))为0.999 882,均小于20A。结论 90个常染色体SNP检测体系可独立应用于法医个体识别和三联体亲子鉴定,并辅助进行二联体亲子鉴定。     

An Impact Velocity Device Design for Blood Spatter Pattern Generation with Considerations for High‐Speed Video Analysis,

A mechanical device that uses gravitational and spring compression forces to create spatter patterns of known impact velocities is presented and discussed. The custom‐made device uses either two or four springs (k₁ = 267.8 N/m, k₂ = 535.5 N/m) in parallel to create seventeen reproducible impact velocities between 2.1 and 4.0 m/s. The impactor is held at several known spring extensions using an electromagnet. Trigger inputs to the high‐speed video camera allow the user to control the magnet's release while capturing video footage simultaneously. A polycarbonate base is used to allow for simultaneous monitoring of the side and bottom views of the impact event. Twenty‐four patterns were created across the impact velocity range and analyzed using HemoSpat. Area of origin estimations fell within an acceptable range (ΔX_av = ?5.5 ± 1.9 cm, ΔY_av = ?2.6 ± 2.8 cm, ΔZ_av = +5.5 ± 3.8 cm), supporting distribution analysis for the use in research or bloodstain pattern training. This work provides a framework for those interested in developing a robust impact device.     

运用二代测序技术拆分混合STR分型

目的探讨二代测序技术在混合STR分型拆分中的应用。方法对一例强制猥亵妇女案中受害人颈部的拭子和血样作DNA提取,以Precision ID GlobalFiler^TM NGS STR Panel v2试剂盒制备文库,经Ion S5测序仪测序,运用Torrent_Suite_v5.2.1软件进行数据分析后,将检测基因座的序列多态STR分型与长度多态STR分型进行比较。结果在D8S1179、D21S11、D2S441、D2S1338、D10S1248五个基因座发现存在序列特异的等位基因亚型,利用这些亚型对混合STR分型进行了成功拆分。结论二代测序技术提供的等位基因序列信息可对混合STR分型的拆分起到帮助作用。     

Predicting the postmortem interval using human intestinal microbiome data and random forest algorithm

Gradual changes in microbial communities in a human body after death can be used to determine postmortem interval (PMI). In this study, gut microflora samples were collected from the vermiform appendix and the transverse colon of human cadavers with PMIs between 5 and 192 h. The results revealed that the appendix might be an excellent intestinal sampling site and the appendix flora had an inferred succession rule during human body decomposition. Firmicutes, Bacteroidetes, and their respective subclasses showed a predictable succession rule in relative abundance over time. A Random Forest regression model was developed to correlate human gut microbiota with PMI. We believe that our findings have increased the knowledge of the composition and abundance of the gut microbiota in human corpses, and suggest that the use of the human appendix microbial succession may be a potential method for forensic estimation of the time of death.     

Using FastID to analyze complex SNP mixtures from indoor dust

Forensically relevant single nucleotide polymorphisms (SNPs) can provide valuable supplemental information to short tandem repeats (STRs) for investigative leads, and genotyping can now be streamlined using massively parallel sequencing (MPS). Dust is an attractive evidence source, as it accumulates on undisturbed surfaces, often is overlooked by perpetrators, and contains sufficient human DNA for analysis. To assess whether SNPs genotyped from indoor dust using MPS could be used to detect known household occupants, 13 households were recruited and provided buccal samples from each occupant and dust from five predefined indoor locations. Thermo Fisher Scientific Precision ID Identity and Ancestry Panels were utilized for SNP genotyping, and sequencing was completed using Illumina^® chemistry. FastID, a software developed to permit mixture analysis and identity searching, was used to assess whether known occupants could be detected from associated household dust samples. A modified “subtraction” method was also used in FastID to estimate the percentage of alleles in each dust sample contributed by known and unknown occupants. On average, 72% of autosomal SNPs were recovered from dust samples. When using FastID, (a) 93% of known occupants were detected in at least one indoor dust sample and could not be excluded as contributors to the mixture, and (b) non-contributor alleles were detected in 54% of dust samples (29 ± 11 alleles per dust sample). Overall, this study highlights the potential of analyzing human DNA present in indoor dust to detect known household occupants, which could be valuable for investigative leads.     

新生代农民工市民化成本的测算框架分析——来自Z市的案例

与第一代农民工不同,新生代农民工在市民化进程中有着不同的诉求,由此形成不同的市民化成本特点。本文以加快新生代农民工市民化为基本政策目标,构建一个更具普遍意义的农民工市民化成本分析框架,并且结合在Z市的调研访谈以及获得的基础数据,初步测算出新生代农民工市民化的成本。     

社会转型期青少年犯罪防控机制对策研究简

转型期的中国各种社会矛盾十分突出,刑事犯罪呈动态化和复杂化态势,其中新生代农民犯罪问题备受社会关注.闲散青少年群体、有不良行为或严重不良行为的青少年群体、流浪乞讨青少年群体、服刑在教人员的未成年子女群体、农村留守儿童群体被列为五类重点青少年群体,如何促使其市民化是防控青少年犯罪的关键点.本文拟就青少年犯罪尤其是“新生代农民”违法犯罪问题进行社会归因研究,结合犯罪心理学、社会学、治安管理学等理论,就防控青少年犯罪以及如何促使其顺利完成城市社会化等问题进行探讨.     

论青年志愿行为的社会引领效应

志愿服务是青年群体进行现代社会参与的一种有效方式,青年群体参与志愿服务不仅满足自身成长和发展的内在需求,而且能够强烈、有效地作用于全社会。青年群体通过志愿行动产生社会行为引领效应;青年群体倡导志愿精神产生社会价值引领效应;青年群体传播志愿文化产生社会风尚引领效应。如今,青年群体在参与志愿服务中产生的"奉献、友爱、互助、进步"的青年志愿精神正成为全社会的普遍诉求,引领和推动着我国志愿服务事业的发展。     

Assessing three soil removal methods for environmental DNA analysis of mock forensic geology evidence

Soil is useful in criminal investigations as it is highly variable and readily transferred. Forensic geologists use several different techniques to removal soil from evidence prior to the analysis of inorganic components. There has been recent interest from the forensic science community to analyze environmental deoxyribonucleic acid (eDNA) associated with soil to augment existing forensic analyses. Notably however, limited research has been conducted to compare commonly used soil removal methods for downstream eDNA analysis. In this study, three soil removal methods were assessed: picking/scraping, sonication, and swabbing. Three mock evidence types (t-shirts, boot soles, and trowels) were sampled in triplicate with each removal method (n = 27). Soil samples underwent DNA isolation, quantification, and amplification of four genomic barcode regions: 16S for bacteria, ITS1 for fungi, ITS2 for plants, and COI for arthropods. Amplicons were prepared into libraries for DNA sequencing on an Illumina^® MiniSeq. DNA concentrations were highest in picked/scraped samples and were statistically significant compared with swabbed and sonicated samples. Amplicon sequence variants (ASVs) were identified, and removal methods had no impact on the recovery of the total number of target ASVs. Additionally, when assessing each sample in multidimensional space, picked/scraped samples tended to cluster separately from swabbed and sonicated samples. The soil core used a reference in this study also clustered with the picked/scraped samples, indicating that these samples may be more reflective of the communities collected from soil cores. Based on these data, we identified that picking/scraping is an acceptable soil removal method for eDNA analysis.     

Simultaneous Detection of Human Mitochondrial DNA and Nuclear‐Inserted Mitochondrial‐origin Sequences (NumtS) using Forensic mtDNA Amplification Strategies and Pyrosequencing Technology

Next‐generation sequencing technologies enable the identification of minor mitochondrial DNA variants with higher sensitivity than Sanger methods, allowing for enhanced identification of minor variants. In this study, mixtures of human mtDNA control region amplicons were subjected to pyrosequencing to determine the detection threshold of the Roche GS Junior^® instrument (Roche Applied Science, Indianapolis, IN). In addition to expected variants, a set of reproducible variants was consistently found in reads from one particular amplicon. A BLASTn search of the variant sequence revealed identity to a segment of a 611‐bp nuclear insertion of the mitochondrial control region (NumtS) spanning the primer‐binding sites of this amplicon (Nature 1995;378:489). Primers (Hum Genet 2012;131:757; Hum Biol 1996;68:847) flanking the insertion were used to confirm the presence or absence of the NumtS in buccal DNA extracts from twenty donors. These results further our understanding of human mtDNA variation and are expected to have a positive impact on the interpretation of mtDNA profiles using deep‐sequencing methods in casework.