牛传染性鼻气管炎病毒SYBR GreenⅠ实时荧光定量PCR检测方法的建立

为了检测牛传染性鼻气管炎病毒,本研究建立了牛传染性鼻气管炎病毒SYBR Green I实时荧光定量PCR检测方法。通过设计特异性引物扩增病毒基因,将扩增的目的片段(119 bp)连接到pMD19-T载体中,构建重组质粒。将重组质粒作为阳性标准品,用于SYBR Green I实时荧光定量PCR检测方法的建立。结果显示,特异性引物扩增的目的片段约为119 bp,符合预期的大小,经测序鉴定所扩增的目的片段正确。敏感性结果显示,用该方法检测阳性质粒标准品的最低限度为3.04 X101 copies/mL,是Nano-PCR的10倍。将牛病毒性腹泻病毒、牛呼吸道合胞体病毒、牛副流感病毒3型与牛传染性鼻气管炎病毒进行特异性检测。结果显示,只有牛传染性鼻气管炎病毒被检测到,其他病毒均未有特异性的扩增曲线,表明该方法的特异性良好。批内和批间重复变异系数均小于1%,显示该方法具有良好的重复性。用建立的方法对20份疑似IBRV的临床样品进行检测,并与Nano-PCR检测方法进行对比,结果显示本方法的阳性样晶率高于Nano-PCR检测方法。本研究建立的牛传染性鼻气管炎病毒SYBR Green I实时荧光定量PCR方法特异性好、灵敏度高、重复性好,可用于牛传染性鼻气管炎病毒的检测。     

利用aroA基因建立鸡传染性鼻炎PCR诊断方法

利用aroA基因设计了1对引物,分别对10株标准副鸡嗜血杆菌(HPG)菌株、14株分离的HPG菌株进行PCR扩增,结果均得到了与预期大小一致的片段,而对10株非HPG菌株和3株病毒进行扩增则无相应片段产生;该PCR能检测出10个菌细胞.与常规PCR方法相比,aroA-PCR的敏感性更高.     

促渗透剂在鸡胚胎免疫中应用的初步研究

选用氮酮和丙二醇作促渗透剂,观察2种渗透剂在气室膜对台盼蓝的促渗透作用及对鸡胚的毒性作用.结果表明,10、20和40 g/L氮酮均有明显的促渗透作用,且其间差异不显著,但随其浓度升高,对鸡胚的毒性作用增强.     

中国东部蒙古族人群15个STR基因座多态性研究

目的调查15个STR基因座在中国东部蒙古族人群中的基因频率分布。方法应用四色荧光标记引物复合扩增技术,对105名东部蒙古族无关个的血样15个STR基因座进行多态性研究。结果在东部蒙古族人群中15个STR基因座偶合率在0.0084～0.2169之间,个体识别概率(DP)在0.7831～0.9916之间,杂合度在0.5619～0.9231之间,三联非父排除率(PE)在0.4490～0.8444之间,多态性信息总量(PIC)在0.5438～0.9178之间,15个STR基因座总TDP值为0.9999999999998,所有基因座经χ2检验符合Hard-Weinberg平衡。结论上述15个STR基因座在东部蒙古族人群中等位基因分布较好,个体识别率高,适合法医个体识别和亲子鉴定。     

用反转录-聚合酶链反应检测猪繁殖与呼吸综合征病毒的研究

根据猪繁殖与呼吸综合征病毒（ＰＲＲＳＶ）美洲型标准毒株（ＡＴＣＣＶＲ－２３３２）的ＯＲＦ６及部分ＯＲＦ７的序列,设计合成了一对引物２６３７４ＰＳ／２６３７５ＰＲ,用反转录聚合酶链反应（ＲＴＰＣＲ）技术对６株ＰＲＲＳＶ北京分离株进行了检测。结果该引物对６株病毒均能扩增出与预期大小相符的ＲＴＰＣＲ产物,并与ＡＴＣＣＶＲ２３３２株扩增产物的大小相当,而欧洲型标准毒株（ＬＶ株）未获扩增片段。进一步用限制性内切酶进行酶切分析,发现这６株病毒及ＡＴＣＣＶＲ－２３３２的ＰＣＲ产物皆出现相同的限制性酶切图谱,证实６株病毒均为ＰＲＲＳＶ。     

Implementation of a robotized real-time PCR setup for the use of the Quantifiler™ Human DNA Quantification Kit

Human DNA quantification occupies a central role within the DNA analytic process of forensic casework samples as DNA quantification results have an important impact on the quality of the short tandem repeat data. Manual processing for the setup of quantification reactions can be time consuming and labor intensive. Therefore automation of quantitative real-time PCR setup was an important component of our DNA-analysis automation concept. Here we show the implementation of a robotized setup for the Quantifiler™ Human DNA Quantification Kit.     

Interrogation of short tandem repeats using fluorescent probes and melting curve analysis: A step towards rapid DNA identity screening

Current forensic DNA profiling methods rely on the analysis of samples at specialised laboratories with an average turnaround time of several days. The ability to rapidly determine a partial profile of short tandem repeats at the point-of-arrest would be of great benefit to police forces around the world, for example enabling a suspect to be rapidly included or excluded from an investigation. We have developed a homogeneous PCR method for the interrogation of STR loci utilising fluorescent oligonucleotide probes and melting curve analysis. Alleles of the D18S51, TH01 and D8S1179 loci were differentiated and identified on the basis of target length and probe melting temperature. Assay performance was evaluated by comparing melting peak data with the AmpFlSTR^® SGM Plus^® system. The method is compatible with direct analysis of unpurified buccal swab samples, enabling a partial STR profile to be generated within 1 h.     

牛CD14结构基因的PCR扩增及序列分析

在用牛肺巨噬细胞构建了ｃＤＮＡ基因文库的基础上，参照人和小白鼠ＣＤ１４的基因序列设计一对引物，用ＰＣＲ方法成功地扩增出编码牛ＣＤ１４的特异性ＤＮＡ片段，并进行了序列分析。结果表明，牛ＣＤ１４基因的核苷酸在相同区域内与人ＣＤ１４的同源性为７９％，推导氨基酸序列的同源性为７３％；而与小白鼠的核苷酸和氨基酸的同源性分别为７５％和７１％。无论在核苷酸还是氨基酸水平上，牛ＣＤ１４基因与人ＣＤ１４的同源性都要高于与小白鼠的同源性。     

利用AP-PCR对柔嫩艾美球虫不同地理株及其杂交株多态性的研究

用随机引物PCR(AP PCR)技术对鸡柔嫩艾美球虫(Eimeria tenella)黑龙江株(H)、山东株(S)及黑龙江株与山东株的杂交株(F1)进行了研究,同时对 2 个不同地理株的子代株与亲代株和F1 株的亲缘关系进行了分析。结果,鸡柔嫩艾美球虫不同地理株之间以及同一地理株的亲代与子代之间存在DNA多态性;并且不同地理株间的种内变异程度较大(Si=0.642 3~0.637 0);同一地理株亲代与子代之间的亲缘关系也稍有改变,但其变异程度不大(Si=0.983 0~0.981 1)。对F1 株的AP PCR分析发现,F1 株与H株、S株的相似值分别为0.692 9、0.682 5,介于H株与S株相似值和传代株间的相似值之间。结果表明,F 株既具有两亲本株的遗传性状,又发生了变异。     

Y-SNPs analysis using two different approaches in a Northern Portugal male population sample

The non-recombining portion of the human Y (NRY) chromosome has various types of variation, including single nucleotide polymorphism (SNP). In spite of their low discrimination power, they provide a powerful and simple exclusion tool for forensic purposes. A special advantage of SNPs is that it can potentially detect smaller DNA fragments (analysis of degraded DNA).The aim of this work consisted in the analysis of a group of SNP polymorphisms (M2, M9, M35, M89, M45, M170, M172, M173, M207 and P25) in a Northern Portugal male population sample, which allows the determination of the most common European haplogroups, including the Northern Portugal ones.The method used for typing these polymorphisms was the real-time PCR with TaqMan probes on the ABI 7000 platform (Applied Biosystems).We had some difficulties in typing some of the markers using this approach. However, the preliminary results obtained for the defined haplogroups are in accordance with those described in close European populations. To confirm the typing and solve the doubts that emerged from the real-time approach, the samples were also typed using SNapShot.