A Y‐Chromosomal Haplotype with Two Short Tandem Repeat Mutations*

Abstract:  The male‐specific Y‐chromosomal short tandem repeat (STR) is a useful tool in forensic casework. The Y haplotype comprised of 16 loci, which is amplified simultaneously by AmpFlSTR^® Yfiler^TM PCR kit and provides strong exculpatory evidence in individual identification. We reported a rare Y‐STR profile with a null allele at the DYS448 locus and an off‐ladder allele at the DYS456 locus, when genotyping material from a vaginal swab in an alleged rape case. Sequence analysis revealed that the DYS448 null allele was a true type of null allele because of a total deletion of 11 upstream repeats and 9 bp of the N₄₂ region, and there were numerous primer binding site mutations as well. The amplicon of the DYS456 locus was a small 92‐bp fragment that was off‐ladder, and sequencing analysis showed that there were only 10 repeats (AGAT)₁₀. This Y chromosome haplotype that was comprised of two variations provided helpful evidence for personal identification.     

A RAM triage methodology for Hadoop HDFS forensics

This paper discusses the challenges of performing a forensic investigation against a multi-node Hadoop cluster and proposes a methodology for examiners to use in such situations. The procedure's aim of minimising disruption to the data centre during the acquisition process is achieved through the use of RAM forensics. This affords initial cluster reconnaissance which in turn facilitates targeted data acquisition on the identified DataNodes. To evaluate the methodology's feasibility, a small Hadoop Distributed File System (HDFS) was configured and forensic artefacts simulated upon it by deleting data originally stored in the cluster. RAM acquisition and analysis was then performed on the NameNode in order to test the validity of the suggested methodology. The results are cautiously positive in establishing that RAM analysis of the NameNode can be used to pinpoint the data blocks affected by the attack, allowing a targeted approach to the acquisition of data from the DataNodes, provided that the physical locations can be determined. A full forensic analysis of the DataNodes was beyond the scope of this project.     

PowerPlex^TM16体系OL等位基因序列分析及命名探讨

目的观察中国汉族人群PowerPlexTM16体系STR基因座分型标准物外等位基因(OL等位基因)的序列组成,探讨其类型及命名。方法应用PowerPlexTM16体系和ABI377或3100遗传分析仪,对10071名中国汉族无关个体的血样DNA进行15个STR基因座的分型,筛选出OL等位基因样本;对该样本进行单基因座扩增、聚丙稀酰胺凝胶电泳、银染显色,获取等位基因条带并再次扩增和测序。结果在11个基因座检见OL等位基因,共32个,频率0.05‰￣4.02‰,各基因座OL等位基因数目1￣9个不等。按其组成分为四类:(1)重复单位完整重复,但重复次数在ladder范围外;(2)不完整重复;(3)侧翼序列个别碱基的插入或缺失;(4)较大片断的缺失。结论OL等位基因类型不一,既有重复次数的变化,也有侧翼序列或核心序列的变化,现有命名原则尚不能反映其组成类型。     

微量生物物证提取套装在现场微量血痕DNA检验中的应用

目的 探讨微量生物物证提取套装应用于提取现场微量血痕DNA的检验效果.方法 将静脉血制成地面血痕.分别应用微量生物物证提取套装法和普通法提取血痕.分别于恒温摇床放置2、24、48、72、96 h(每组50份)进行血痕DNA检验,对比各组检验结果.结果 恒温摇床上分别放置24、48、72、96 h后,微量生物物证提取套装...     

Comparison of Four Saliva Detection Methods to Identify Expectorated Blood Spatter

Blood spatter analysis is an important step for crime scene reconstruction. The presence of saliva in blood spatter could indicate expectorated blood which is difficult to distinguish from impact spatter. In this study, four saliva test methods (SALIgAE^®, Phadebas^® sheet, RSID^™-Saliva kit, and starch gel diffusion) were compared to identify the best method for detecting expectorated blood spatter. The RSID^™-Saliva kit showed the highest sensitivity even when saliva was mixed with blood, and was not inhibited by the presence of blood. The SALIgAE^® test provided easy and rapid results, but the yellow color of a positive reaction was overwhelmed by the red color of the blood. The starch gel diffusion method and the Phadebas^® sheet exhibited relatively low sensitivity and the assay took a long time. When using the RSID^™-Saliva kit for identifying saliva in blood, results should be read within 10 min.     

鸭瘟病毒抗体间接ELISA检测试剂盒的研制

将鸭瘟病毒(DPV)CHv株经过鸭胚成纤维细胞增殖、反复冻融、差速离心和蔗糖密度介质离心制备纯化抗原,建立了用于检测鸭血清中抗DPV特异性IgG抗体的间接ELISA方法,并对其进行了标准化研究,确定了最佳工作条件,研制了相应的检测试剂盒并对盒内各组分的保存条件、质量控制以及试剂盒的特异性、重复性进行了研究。结果显示,4.75μg/孔的纯化DPV抗原包被反应板可获得良好的特异性和敏感性,1∶100稀释的待检血清样品反应后D405 nm值换算为抗体效价的标准直线方程为y=1.573 3.552x(r=0.953,n=40)。试剂盒在4℃保存3个月或-20℃保存10个月后各项性能都很好。应用该试剂盒对皮下注射、口服和滴鼻免疫DPV弱毒的20日龄樱桃谷鸭血液中抗DPV特异性IgG抗体效价进行了测定,皮下免疫鸭于第6 d,口服和滴鼻免疫鸭于第9 d可在血清中检测到DPV特异性抗体,且至第60 d时依然可检测到高效价抗体。证实,该试剂盒可用于鸭瘟的血清流行病学调查和鸭场免疫抗体水平的监测。     

Effectiveness of Coupled Application of AmpFℓSTR Yfiler Kit and Reduced Size Y‐chromosomal Short Tandem Repeat Analysis for Archeological Human Bones

The AmpF?STR Yfiler PCR Amplification (Yfiler) kit continues to be improved for a better analytical efficiency in cases of highly degraded DNA. The authors endeavored to determine whether coupling of the Yfiler kit with supplemental multiplex amplification of some Y‐STR loci is a more efficient analytical mode for poorly preserved human femurs (n = 15) discovered at Korean archeological sites. To reveal locus profiles not easily obtained by Yfiler analysis, custom‐designed primers were adopted for the DYS390, DYS391, DYS392, DYS438, DYS439, and DYS635 loci. The success rate for 16 Y‐STR locus profiles obtained from the 15 femurs was improved from 18.33% (in the use of Yfiler kit only) to 49.17% (the coupled use of Yfiler and custom‐designed primers). In this study, the authors established that the custom‐designed primers offer a markedly improved success rate for obtainment of Y‐STR profiles from degraded aDNA not easily identified by sole use of the Yfiler assay.     

Quantitative PCR overestimation of DNA in samples contaminated with tin

Metals can pose challenges while conducting forensic DNA analysis. The presence of metal ions in evidence-related DNA extracts can degrade DNA or inhibit PCR as applied to DNA quantification (real-time PCR or qPCR) and/or STR amplification, leading to low success in STR profiling. Different metal ions were spiked into 0.2 and 0.5 ng of human genomic DNA in an “inhibition study” and the impact was evaluated by qPCR using the Quantifiler™ Trio DNA Quantification Kit (Thermo Fisher Scientific) and an in-house SYBR Green assay. This study reports on a contradictory finding specific to tin (Sn) ions, which caused at least a 38,000-fold overestimation of DNA concentration when utilizing Quantifiler Trio. This was explained by the raw and multicomponent spectral plots, which indicated that Sn suppresses the Quantifiler Trio passive reference dye (Mustang Purple™, MP) at ion concentrations above 0.1 mM. This effect was not observed when DNA was quantified using SYBR Green with ROX™ as the passive reference, nor when DNA was extracted and purified prior to Quantifiler Trio. The results show that metal contaminants can interfere with qPCR-based DNA quantification in unexpected ways and may be assay dependent. The results also highlight the importance of qPCR as a quality check to determine steps for sample cleanup prior to STR amplification that may be similarly impacted by metal ions. Forensic workflows should recognize the risk of inaccurate DNA quantification of samples that are collected from substrates containing tin.     

3种甲醛固定组织DNA提取方法的比较

目的对不同方法提取甲醛固定组织中DNA的效果进行比较,寻找一种操作简便、经济实用、质量较高的DNA提取方法。方法取甲醛固定的心肌组织14份,分别以改良酚-氯仿法,改良Trizol法,试剂盒法提取DNA,进行紫外分光光度计测定OD260/OD280值后,经PCR扩增,琼脂糖凝胶电泳分析确定提取的DNA质量。结果改良酚-氯仿法,改良Trizol法,试剂盒法OD260/OD280比值分别为1.841 5±0.380 4、1.370 5±0.336 7、0.831 6±0.175 0。两两比较均有显著性差异(P<0.05)。3种不同方法提取DNA含量分别为0.943 8±0.530 1、0.707 5±0.423 6、0.342 8±0.182 5。PCR扩增后琼脂糖凝胶电泳显示以改良酚-氯仿法所提DNA的谱带清晰度好于其它两种方法。结论改良酚-氯仿法简便有效,所用试剂价格低廉,是一种经济实用的甲醛固定组织DNA提取方法。