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Direct PCR Improves the Recovery of DNA from Various Substrates
Authors:Jennifer E L Templeton MSc  Duncan Taylor PhD  Oliva Handt PhD  Pawel Skuza MEd  Adrian Linacre DPhil
Institution:1. School of Biological Sciences, Flinders University, Bedford Park, Adelaide, SA, 5042 Australia

Additional information and reprint requests:

Jennifer E. L. Templeton, M.Sc.

The School of Biological Sciences

Flinders University

Bedford Park

Adelaide

SA, Australia, 5042

E-mail: jennifer.templeton@flinders.edu.au;2. School of Biological Sciences, Flinders University, Bedford Park, Adelaide, SA, 5042 Australia

Forensic Science South Australia, Adelaide, SA, 5000 Australia;3. eResearch, Flinders University, Bedford Park, Adelaide, SA, 5042 Australia;4. School of Biological Sciences, Flinders University, Bedford Park, Adelaide, SA, 5042 Australia

Abstract:This study reports on the comparison of a standard extraction process with the direct PCR approach of processing low-level DNA swabs typical in forensic investigations. Varying concentrations of control DNA were deposited onto three commonly encountered substrates, brass, plastic, and glass, left to dry, and swabbed using premoistened DNA-free nylon FLOQswabs?. Swabs (= 90) were either processed using the DNA IQ? kit or, for direct PCR, swab fibers (~2 mm2) were added directly to the PCR with no prior extraction. A significant increase in the height of the alleles (< 0.005) was observed when using the direct PCR approach over the extraction methodology when controlling for surface type and mass of DNA deposited. The findings indicate the potential use of direct PCR for increasing the PCR product obtained from low-template DNA samples in addition to minimizing contamination and saving resources.
Keywords:forensic science  DNA typing  trace DNA  direct Polymerase Chain Reaction  short tandem repeats  human identification
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