HLA-DRB1基因分型芯片的法医物证学应用价值研究

目的对HLA-DRB1基因分型芯片在个体识别中的应用价值进行研究。方法根据HLA-DRB1基因座不同等位基因的独特序列设计探针,制成分型芯片。将待测样品DNA用末端标记了CY5的引物进行PCR扩增,产物与芯片进行杂交,根据杂交产生的荧光信号值确定样品在HLA-DRB1位点的基因型。将这一方法应用于561份样本的HLA-DRB1基因分型,根据基因型分布统计分析其法医学应用价值。同时,进行了家系调查和方法灵敏度分析,并应用于部分案例。结果利用微量检材,HLA-DRB1基因芯片可检测DRB1位点等位基因26个,基因型的分布符合Hardy-Weinberg平衡定律,该位点的观察杂合度(Ho)为0.888,期望杂合度(He)为0.902,多态信息含量(PIC)为0.893,平均非父排除率(PE)为0.801。家系调查和案例运用的结果表明,HLA-DRB1位点等位基因由亲代向子代的传递符合孟德尔遗传定律。结论HLA-DRB1为高度多态位点,其基因分型芯片可在亲子鉴定和个体识别中发挥重要作用。     

HLA-DRBl基因分型芯片的法医物证学应用价值研究

目的对HLA-DRBl基因分型芯片在个体识别中的应用价值进行研究。方法根据HLA-DRBl基因座不同等位基因的独特序列设计探针．制成分型芯片。将待测样品DNA用末端标记了CY5的引物进行PCR扩增，产物与芯片进行杂交．根据杂交产生的荧光信号值确定样品在HLA-DRB1位点的基因型。将这一方法应用于561份样本的HLA-DFIBl基因分型，根据基因型分布统计分析其法医学应用价值。同时．进行了家系调查和方法灵敏度分析，并应用于部分案例。结果利用微量检材．HLA-DRB1基因芯片可检测DRB1位点等位基因26个，基因型的分布符合Harely—Weinberg平衡定律．该位点的观察杂合度(Ho)为0．888，期望杂合度(He)为0．902，多态信息含量(PIC)为0．893，平均非父排除率(PE)为0．80l。家系调查和案例运用的结果表明，HLA-DRB1位点等位基因由亲代向子代的传递符合盂德尔遗传定律。结论HLA-DRB1为高度多态位点，其基因分型芯片可在亲子鉴定和个体识别中发挥重要作用。     

中国华北地区汉族人群HLA两基因座的PCR-SBT分型

HLA复合体定位于第6号染色体短臂6p21.31区,长约3600kb,是一个由一系列紧密连锁的基因座所组成的目前所知人体内最复杂的遗传多态系统。HLA的分型对法医学个体认定、器官移植的供体选择、HLA相关疾病及人类学等研究均有重要意义[1]。本文作者采用聚合酶链反应-直接测序分型(PCR-SBT)方法对中国华北地区汉族人群536名健康无关个体进行HLA-A,-B基因座高分辨分型,旨在探讨HLA的PCR-SBT分型及其技术在法医学研究中的应用价值。1材料与方法1.1样本中国北京、天津、石家庄地区536名健康、无关汉族个体(男性330名,女性206名)的静脉血2~…     

温州汉族人群D12S391、D18S865基因座遗传多态性研究

目的研究短串联重复序列D12S391、D18S865的遗传多态性及法医学应用价值。方法应用聚合酶链反应(PCR)、聚丙烯酰胺凝胶电泳(PAGE)及银染显带技术对温州地区汉族454名无关个体的D12S391、D18S865位点进行分型。结果D12S391观察到11个等位基因,50种基因型;D18S865观察到7个等位基因,21种基因型。基因型频率的分布符合Hardy-Weinberg平衡,两个基因座的观测杂合度(H)分别为0.7974、0.7379;个体识别能力(DP)分别为0.9566、0.9077;多态信息含量(PIC)分别为0.8260、0.7279。结论两个STR基因座具有较高杂合度,等位基因分布符合Hardy-Weinberg平衡(P>0.5),在法医学应用和群体遗传学研究中较高的价值。     

生物素掺入反向杂交法在法医学中应用的研究

建立了一套快速、准确检测人类 HLA－ DQA基因的反向杂交检测技术,可准确判定 HLA－ DQA基因位点的 6个等位基因即 0101、 0102、 0103、 0201、 0301、 0401。调查了中国北方汉族人群中 200例无关个体的 HLA－ DQA基因频率及基因型的频率分布,杂合度 (H)为 0.75,个体识别能力 (DP)为 0.928。采用生物素直接掺入 PCR扩增的方法, 1ng的 DNA样品即可准确判型。对血液、血斑、精斑、精液与阴道液的混合斑、肌肉组织等检材进行检测,效果良好。在刑事案件及亲子关系鉴定中应用,准确地判定了检材的 HLA－ DQA基因型,为侦察破案提供了科学依据。将此项技术商品化,完成了试剂盒的研制。     

贵州黔南地区汉族人群18个STR基因座的遗传多态性

目的调查贵州黔南地区汉族人群D5S818等18个基因座的遗传多态性。方法采用国产DNATyperTM19荧光标记试剂盒,获得1104名黔南地区汉族无关个体18个STR基因座的DNA分型,并应用统计软件计算等位基因的分布频率等群体遗传学数据。结果 18个STR基因座的基因型分布均符合Hardy-Weinberg平衡(P>0.05),杂合度(H)在0.622~0.915之间,匹配概率(Pm)在0.017~0.220之间,个体识别概率(DP)在0.780~0.983之间,多态信息含量(PIC)在0.540~0.900之间,非父排除概率(PE)值在0.318~0.826之间。结论 18个STR基因座具有遗传多态性,在该地区汉族人群的多态性研究中具有较高的应用价值。     

Gc亚型检测的复合MS-PCR法及其应用

目的探讨建立Gc亚型检测的复合MS-PCR法及其应用价值。方法根据Gc基因中的2处点突变,设计2对片段相差5bp的等位基因特异性引物和1条公共引物进行复合MS-PCR,分析Gc多态性,并调查武汉地区218例汉族无关个体Gc多态性和鉴定10例亲子关系。结果复合MS-PCR检测的Gc基因型,与AmpliTypePM试剂盒的分型结果一致;武汉地区汉族人群Gc基因的3个常见等位基因Gc1F、Gc1S、Gc2的基因频率分别为0.4816、0.2592、0.2592,观察杂合度(Hobs)、期望杂合度(Hexp)、多态性信息含量(PIC)、个人识别能力(DP)、非父排除率(PE)分别为0.6193、0.6359、0.6253、0.7974、0.3480,基因型分布符合Hardy-Weinberg平衡;真三联体和非真三联体亲子鉴定各5例,前者不排除父子关系,与常规STR分型一致,后者经Gc-MS-PCR分型排除2例。结论建立复合MS-PCR法检测Gc亚型在法医物证鉴定中有实用价值。     

用反相杂交技术对HLA-DQA1基因分型及其应用

目的 :HLA -DQA1其因的分型研究及在实际办案中的应用。方法 :PCR结合反相杂交检测技术对HLA -DQA1基因进行分型。结果 :检见7种基因 ,24种基因型 ,获得上海地区HLA -DQA1基因的基因频率及基因型的频率分布数据。结论 :对法医学中常见的血液 (痕 )、牙齿、精斑、混合斑、人体组织等检材进行HLA -DQA1分型检测 ,其结果稳定可靠 ,为实际办案提供了科学依据     

温州汉族人群D7S2846、D19S400和D18S535基因座的遗传多态性研究

目的研究D7S2846、D19S400和D18S535位点在温州汉族人群的遗传多态性。方法EDTA抗凝血样采自194名无血缘关系温州地区汉族个体,用chelex-100法提取DNA,PCR扩增,聚丙烯酰胺凝胶电泳,银染显色分析。结果D7S2846观察到6个等位基因及15种基因型;D19S400观察到10个等位基因及36种基因型;D18S535观察到8个等位基因及26种基因型。各基因座的杂合度(H)分别为:0.644、0.724、0.772;个人识别能力(Dp):0.854、0.940、0.938。结论三个STR基因座具有较高杂合度,等位基因分布符合Hardy-Weinberg平衡,在法医学应用和群体遗传学研究中有较高的价值。     

FUT2/01基因座在中国北方汉族人群中的多态性

目的调查STR基因座FUT2/01在中国人群中的基因结构特征及其在中国人群中的多态性分布特点,并对其法医学应用前景进行探讨。方法应用PCR方法扩增FUT2/01基因,DNA测序确定所有等位基因的序列;常规聚丙烯酰胺凝胶电泳调查中国人群中FUT2/01基因座的多态性分布,同时应用荧光标记引物进行自动化检测分析和基因型鉴定。结果DNA测序结果仅显示核心序列的重复数目变化所导致的长度差异;在所调查的中国汉族人群162例个体中共发现9种等位基因和28种基因型,系统的个体识别率为0.9639,父权排除率为0.6266。此外,荧光标记引物经自动化检测可对该基因座进行良好的分型。结论FUT2/01基因座在中国汉族人群中表现出高度的杂合性和个体特异性,在法医学鉴定中具有较高的应用价值。     

Application of HLA-DRB1 genotyping by oligonucleotide micro-array technology in forensic medicine

The human leukocyte antigen (HLA) system is known to be the most complex polymorphic system in the human genome. Among all of the HLA loci, HLA-DRB1 has the second largest number of alleles. The purpose of this study is to develop an oligonucleotide micro-array based HLA-DRB1 typing system for use in forensic identification, anthropology, tissue transplantation, and other genetic research fields. The system was developed by analyzing the HLA-DRB1 (DRB1) genotypes in 1198 unrelated healthy Chinese Han individuals originating from various parts of China and residing in Shanghai, China. METHOD: Polymerase chain reaction (PCR) coupled with the oligonucleotide micro-array technology was used to detect and type HLA-DRB1 alleles of the sample individuals. The reliability, sensitivity, consistency and specificity were evaluated for use in forensic identification. Furthermore, a meta-analysis was carried out by comparing the allele frequencies of the HLA-DRB1 locus with those of other Chinese Han groups, Chinese minorities and other ethnic populations. RESULTS: All the DNA samples yielded a 273 bp amplification product, with no other amplification products in this length range. The minimum quantity of DNA detected by this method is 15 ng in a PCR reaction system of 25 microl. The population studied appeared to be not in Hardy-Weinberg equilibrium. Observed heterozygosity (Ho), expected heterozygosity (He), expected probability of exclusion (PE), polymorphic information content (PIC), and discrimination power (DP) of the HLA-DRB1 locus from the Shanghai Han ethnic group were evaluated to be 0.8022, 0.8870, 0.7741, 0.8771, 0.9750, respectively. A total of 25 HLA-DRB1 alleles were identified. HLA-DRB1*09XX, *04XX, *12XX and *15XX were the most frequent DRB1 alleles, which were observed in 58.76% of the sample. One hundred and sixteen genotypes were found. The five most frequent genotypes were: *04XX/*04XX (0.0626), *09XX/*09XX (0.0593), *04XX/*09XX (0.0551), *09XX/*15XX (0.0384) and *08XX/*12XX (0.0351). The meta-analysis showed that there were uniquely distributed features of DRB1 alleles among various ethnic populations and among the studied population groups from various regions with the same ethnic origin. CONCLUSIONS: An HLA-DRB1 genotyping system has been developed and established based on the oligonucleotide micro-array technology. The HLA-DRB1 typing of the Han population in Shanghai has revealed a relatively high heterogeneity. Information obtained in this study will be useful for medical and forensic applications as well as in anthropology research. Large-scale micro-array detection is highly accurate and reliable for DNA-based HLA-DRB1 genotyping. These results suggest that HLA-DRB1 DNA polymorphisms and the database of the Shanghai Han group have useful applications in processing forensic casework (as personal identification, paternity test), tracing population migration and genetic diagnosis.     

HLA-DRB1位点的PCR-SSP分型在亲子鉴定中的应用研究

应用PCR－SSP（PCRamplificationwithsequencespecificprimer）方法将HLAⅡ类DRB1位点基因分型应用于亲权鉴定。对42例亲子鉴定案例进行分析研究的结果表明,本方法简单、快速、结果可靠,且具有较高的非父排除概率（66．3％）,不仅适用于法医学亲手鉴定和个人识别,亦可应用于移植配型、HLA相关疾病及人类遗传学研究。     

PowerPlex 21与GoldeneyeTM 20A试剂盒的一致性验证及法医学应用

目的：确认PowerPlex 21试剂盒与GoldeneyeTM 20A试剂盒分型结果的一致性。方法应用两试剂盒对205名北京汉族无关个体血样DNA进行复合扩增,观察19个重叠STR基因座分型的一致性,并统计D1S1656的遗传多态性。结果所有19个重叠基因座分型相同,两个试剂盒的杂合基因座峰高比例差异无统计学意义（P〉0.05）。D1S1656杂合度为0.878,个人识别率为0.949,三联体非父排除率为0.751,二联体非父排除率为0.506,多态信息含量为0.810。结论 PowerPlex21试剂盒与GoldeneyeTM 20A试剂盒分型结果一致性好,引物设计合理;D1S1656多态性好,可用于人类遗传分析及法医学中的亲子鉴定和个人识别。     

KCNQ1内含子1a中STR基因座遗传多态性及PIA分型

目的调查汉族群体KCNQ1基因内含子1a中STR基因座的遗传多态性,并采用PIA分型技术确定等位基因的亲代来源。方法用PCR-STR分型技术对230例武汉汉族无关个体样本进行KCNQ1基因内含子1a中STR基因座分型检测;同时选用两种甲基化敏感的限制酶（msRE）HhaI和HpaⅡ对家系中孩子的基因组DNA进行消化后,采用PIA分型技术检测父源等位基因。结果KCNQ1内含子1a中STR基因座在汉族人群中检出10个等位基因、24种基因型,其个体识别能力（PD）、多态性信息含量（PIC）和非父排除率（PE）分别为0．852、0．66和0．484。HhaI和HpaII可消化个体的母源等位基因,PIA分型仅能检测出单一的父源等位基因。结论KCNQ1内含子1a中STR基因座在汉族群体具有较高的遗传多态性,PIA分型技术可以确定个体等位基因的亲代来源,具有较高的法医学应用价值。     

北京地区汉族人群6个STR基因座的遗传多态性

目的对北京地区汉族人群遗传数据进行调查研究。方法利用PCR自动化检测技术检测中国北京地区汉族人群D1S1656,D10S2325,D11S2368,D12S391,D14S1434及GATA198B05共6个STR基因座的遗传多态性,获得6个STR基因座的群体遗传学数据,评价其法医学应用价值。结果6个STR基因座的个体鉴别力（Discrimination power,DP）在0．9777-0．8769之间,多态性信息含量（Polymorphism information content,PIC）在0．6867-0．8801之间,杂合度（Heterozygosity,H）在0．7219～O．8684之间,非父排除率（Probability of paternity exclusion,PE）在0．4456-0．6793之间,累积个体鉴别力为0．99999997,累积非父排除率为0．995765192。结论6个STR基因座等位基因频率分布均匀,多态性高,适用于法医学亲子鉴定及个人识别,可作为现有基因座的补充。     

犬mtDNA高变区Ⅰ多态性及法医学意义初探

目的对犬毛发mtDNA高变区Ⅰ多态性进行检测,并探讨其在法医学中的应用价值。方法 54只家犬(拉布拉多犬7只、史宾格犬7只、德国牧羊犬6只、罗威纳犬4只、藏獒4只、昆明犬4只、杜伯文犬3只、金毛寻猎犬1只、昆明本地犬18只)。采用复合巢式PCR对54只家犬mtDAN HVRⅠ15803～16114区域进行测序分析。结果 54只家犬在mtDNA HVRⅠ15458～16100区域共检测到643个碱基对信息,共检出分属3大单倍群26个多态点;15个单倍型,频率在1.9%～20.4%之间,其中单倍型A11频率最高;个体识别概率为0.898,平均核苷酸差异和平均核苷酸多样度为7.62±3.61和0.011 9±0.006 3。结论采用本文方法,可检测犬mtDNA HVR-Ⅰ多态性,并可利用其较高的个体识别概率为相关案件侦察提供线索或依据。     

Typing the 1.1 kb control region of human mitochondrial DNA in Japanese individuals

This study presents a reliable method that uses high-fidelity long-range PCR and optimized primers to assess polymorphism and to genotype human mitochondrial DNA (mtDNA). This method was used to analyze polymorphic sites in the human mtDNA control region, including hypervariable regions I, II, and III (HVI, HVII, and HVIII), from 124 unrelated Japanese individuals. In HVI, HVII, and HVIII, 80, 37, and 14 polymorphic sites were identified, respectively, excluding those in the homopolymeric cytosine stretch (C-stretch) regions. The region between HVI and HVII also contained 15 polymorphic sites. On the other hand, C-stretch length heteroplasmy in HVI or HVII was observed in 66 of 124 Japanese individuals (53%), which is much higher than in Caucasian populations. The variants in the C-stretch regions were characterized by counting the number of heteroplasmic peaks split from the single peak in homoplasmic sequences (i.e., 16244G and 16255G in HVI and 285G in HVII). Including the C-stretch length heteroplasmy, the 124 Japanese mtDNA samples were classified into 116 distinct haplotypes. The random match probability and the genetic diversity were estimated to be 0.95% and 0.998581, respectively, indicating that the method presented here has higher discrimination than the conventional method for mtDNA typing using HVI and HVII. [Correction added after publication 30 January 2007: in the preceding sentence random match probability and genetic diversity estimates were corrected from 0.95 and 0.998581%, respectively, to 0.95% and 0.998581, respectively.] The haplogroups and their frequencies observed in this study (i.e., D4; 13.7%, M7a1; 11.3%, D4a; 9.7% and M7b2; 8.9%) were similar to those observed in other studies of Japanese mtDNA polymorphism. The method described here is suitable for forensic applications, as shown by successful analysis of tissues from highly putrefied remains of an infant, which allowed maternal relationship to be determined via mtDNA haplotyping.     

Rapid and sensitive typing of forensic stains by PCR amplification of polymorphic simple repeat sequences in case work.

After failure of conventional typing and multilocus DNA fingerprinting methods to compare a minute vaginal swab stain with blood from a murder victim and a suspect, we used enzymatic DNA amplification (polymerase chain reaction, PCR) to discriminate the DNAs by typing of simple sequence lengths polymorphisms. A mixed dinucleotide locus in the HLA-DRB gene region and three novel tetranucleotide polymorphisms located autosomally as well as on the human Y chromosome were used to exclude a jailed subject from a case of murder.